STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algIAlginate O-acetyltransferase AlgI; Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family. (502 aa)    
Predicted Functional Partners:
EFO33026.1
Acyl carrier protein.
  
 
 0.973
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.973
lgrD_2
Linear gramicidin synthetase LgrD.
 
  
 0.878
lgrD_1
Linear gramicidin synthetase LgrD.
  
  
 0.844
EFO33957.1
Amino acid adenylation domain-containing protein.
  
  
 0.844
EFO32050.1
Putative Sel1 domain-containing protein; Identified by match to protein family HMM PF08238.
  
 
 0.810
EFO32051.1
Serine/threonine protein kinase; Identified by match to protein family HMM PF08238.
  
 
 0.810
EFO32052.1
Conserved hypothetical protein.
       0.773
EFO32053.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
EFO32048.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.768
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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