STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32104.1Oxidoreductase domain-containing protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894. (383 aa)    
Predicted Functional Partners:
EFO29600.1
Xylose isomerase domain-containing protein; Identified by match to protein family HMM PF01261.
 
  0.887
EFO32102.1
Oxidoreductase domain-containing protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
     0.860
EFO30048.1
Oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
  
  0.812
EFO32106.1
4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM PF00903; match to protein family HMM PF01261.
  
 
 0.800
EFO32103.1
Conserved hypothetical protein.
       0.773
EFO32712.1
Thua; Identified by match to protein family HMM PF06283.
 
    0.758
EFO29389.1
Alpha-mannosidase; Identified by match to protein family HMM PF01074; match to protein family HMM PF07748; match to protein family HMM PF09261.
  
    0.748
EFO34175.1
Xylose isomerase domain-containing protein; Identified by match to protein family HMM PF01261.
 
 
  0.738
EFO32713.1
Oxidoreductase domain-containing protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
     0.734
EFO34177.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
 
  
 0.708
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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