STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO31646.12-oxo-hepta-3-ene-1,7-dioic acid hydratase. (104 aa)    
Predicted Functional Partners:
EFO31645.1
Bacteriophage DNA transposition protein B.
       0.773
EFO31641.1
Transposase IS4; Identified by match to protein family HMM PF01609.
       0.574
EFO31642.1
Chromosome partitioning protein ParB; Identified by match to protein family HMM PF02195.
       0.574
EFO31643.1
Conserved hypothetical protein.
       0.574
EFO31644.1
Transposase; Identified by match to protein family HMM PF09299.
       0.574
EFO31647.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.522
EFO31648.1
Conserved hypothetical protein.
       0.522
EFO31649.1
Gp05.
       0.522
EFO31650.1
Conserved hypothetical protein.
       0.522
EFO31651.1
Hypothetical protein.
       0.522
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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