EFO31729.1 protein (Roseibium sp. TrichSKD4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO29581.1	EFO30997.1	TRICHSKD4_5412	TRICHSKD4_4598	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.678
EFO29581.1	EFO31187.1	TRICHSKD4_5412	TRICHSKD4_3416	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Ribose import ATP-binding protein RbsA.	0.678
EFO29581.1	EFO31729.1	TRICHSKD4_5412	TRICHSKD4_2819	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.	0.806
EFO29581.1	EFO31867.1	TRICHSKD4_5412	TRICHSKD4_2958	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Antibiotic ABC transporter permease; Identified by match to protein family HMM PF03412.	0.491
EFO29581.1	EFO33676.1	TRICHSKD4_5412	TRICHSKD4_0785	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.678
EFO29581.1	dnaK	TRICHSKD4_5412	TRICHSKD4_1350	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.431
EFO29836.1	EFO29837.1	TRICHSKD4_5672	TRICHSKD4_5673	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	0.999
EFO29836.1	EFO30997.1	TRICHSKD4_5672	TRICHSKD4_4598	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.640
EFO29836.1	EFO31187.1	TRICHSKD4_5672	TRICHSKD4_3416	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Ribose import ATP-binding protein RbsA.	0.640
EFO29836.1	EFO31729.1	TRICHSKD4_5672	TRICHSKD4_2819	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.	0.943
EFO29836.1	EFO33676.1	TRICHSKD4_5672	TRICHSKD4_0785	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.640
EFO29837.1	EFO29836.1	TRICHSKD4_5673	TRICHSKD4_5672	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.999
EFO29837.1	EFO30997.1	TRICHSKD4_5673	TRICHSKD4_4598	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.650
EFO29837.1	EFO31187.1	TRICHSKD4_5673	TRICHSKD4_3416	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Ribose import ATP-binding protein RbsA.	0.650
EFO29837.1	EFO31729.1	TRICHSKD4_5673	TRICHSKD4_2819	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.	0.706
EFO29837.1	EFO33676.1	TRICHSKD4_5673	TRICHSKD4_0785	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.650
EFO30997.1	EFO29581.1	TRICHSKD4_4598	TRICHSKD4_5412	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.678
EFO30997.1	EFO29836.1	TRICHSKD4_4598	TRICHSKD4_5672	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.640
EFO30997.1	EFO29837.1	TRICHSKD4_4598	TRICHSKD4_5673	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	0.650
EFO30997.1	EFO31729.1	TRICHSKD4_4598	TRICHSKD4_2819	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.	0.711