STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO31758.1Lipoprotein. (191 aa)    
Predicted Functional Partners:
EFO31018.1
Conserved hypothetical protein.
  
     0.773
EFO29548.1
Conserved hypothetical protein.
  
     0.769
EFO34462.1
Putative lipoprotein.
  
     0.766
EFO30014.1
Identified by match to protein family HMM PF06776.
  
     0.765
EFO34383.1
Putative cytoplasmic protein.
  
     0.763
EFO31566.1
Putative CheA signal transduction histidine kinase.
  
     0.763
EFO29493.1
Conserved hypothetical protein.
  
     0.762
EFO30334.1
Putative signal peptide protein.
  
     0.761
EFO34598.1
Phasin; Identified by match to protein family HMM PF09361; match to protein family HMM TIGR01841; match to protein family HMM TIGR01985.
  
     0.756
EFO31760.1
Protein YfiH; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.756
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.