STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO31472.1AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501. (549 aa)    
Predicted Functional Partners:
EFO32966.1
NAD-reducing hydrogenase HoxS subunit alpha; Identified by match to protein family HMM PF01512.
    
 
 0.861
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.766
EFO30346.1
Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
   
 0.740
EFO32334.1
AMP-dependent synthetase and ligase.
 
 
  0.699
EFO33727.1
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.673
lgrD_2
Linear gramicidin synthetase LgrD.
 0.663
EFO31475.1
acyl-CoA synthetase short-chain family member 3; Identified by match to protein family HMM PF00501.
 
 
 
0.655
EFO34347.1
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
  
 
  0.650
EFO32963.1
acyl-CoA dehydrogenase family member 11; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
 
  0.648
EFO34294.1
Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.634
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.