EFO31477.1 protein (Roseibium sp. TrichSKD4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO29581.1	EFO30997.1	TRICHSKD4_5412	TRICHSKD4_4598	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.678
EFO29581.1	EFO31187.1	TRICHSKD4_5412	TRICHSKD4_3416	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Ribose import ATP-binding protein RbsA.	0.678
EFO29581.1	EFO31477.1	TRICHSKD4_5412	TRICHSKD4_3169	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204.	0.805
EFO29581.1	EFO33676.1	TRICHSKD4_5412	TRICHSKD4_0785	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.678
EFO29581.1	dnaK	TRICHSKD4_5412	TRICHSKD4_1350	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.431
EFO30997.1	EFO29581.1	TRICHSKD4_4598	TRICHSKD4_5412	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.678
EFO30997.1	EFO31188.1	TRICHSKD4_4598	TRICHSKD4_3417	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	0.684
EFO30997.1	EFO31477.1	TRICHSKD4_4598	TRICHSKD4_3169	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204.	0.711
EFO30997.1	EFO33015.1	TRICHSKD4_4598	TRICHSKD4_1638	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Lipopolysaccharide export system ATP-binding protein LptB; Identified by match to protein family HMM PF00005.	0.736
EFO30997.1	lolD	TRICHSKD4_4598	TRICHSKD4_0744	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.699
EFO31187.1	EFO29581.1	TRICHSKD4_3416	TRICHSKD4_5412	Ribose import ATP-binding protein RbsA.	Iron-sulfur clusters transporter Atm1; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.678
EFO31187.1	EFO31188.1	TRICHSKD4_3416	TRICHSKD4_3417	Ribose import ATP-binding protein RbsA.	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	0.970
EFO31187.1	EFO31477.1	TRICHSKD4_3416	TRICHSKD4_3169	Ribose import ATP-binding protein RbsA.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204.	0.711
EFO31187.1	EFO33015.1	TRICHSKD4_3416	TRICHSKD4_1638	Ribose import ATP-binding protein RbsA.	Lipopolysaccharide export system ATP-binding protein LptB; Identified by match to protein family HMM PF00005.	0.871
EFO31187.1	lolD	TRICHSKD4_3416	TRICHSKD4_0744	Ribose import ATP-binding protein RbsA.	Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.699
EFO31188.1	EFO30997.1	TRICHSKD4_3417	TRICHSKD4_4598	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.684
EFO31188.1	EFO31187.1	TRICHSKD4_3417	TRICHSKD4_3416	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	Ribose import ATP-binding protein RbsA.	0.970
EFO31188.1	EFO31477.1	TRICHSKD4_3417	TRICHSKD4_3169	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204.	0.727
EFO31188.1	EFO33015.1	TRICHSKD4_3417	TRICHSKD4_1638	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	Lipopolysaccharide export system ATP-binding protein LptB; Identified by match to protein family HMM PF00005.	0.836
EFO31188.1	EFO33676.1	TRICHSKD4_3417	TRICHSKD4_0785	Sulfate/thiosulfate import ATP-binding protein CysA; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.780