STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO31226.12-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060. (330 aa)    
Predicted Functional Partners:
EFO31227.1
Identified by match to protein family HMM PF01575.
 
 
  0.907
EFO31225.1
acyl-CoA dehydrogenase family member 10; Identified by match to protein family HMM PF01636.
 
     0.897
EFO33026.1
Acyl carrier protein.
  
 0.850
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.850
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.
  
 
 0.849
EFO32274.1
3-oxoacyl-(acyl-carrier-protein) synthase 1; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.838
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.838
EFO31224.1
Levodione reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
  
 
 0.821
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.802
EFO31228.1
medium-chain-fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501.
 
  
 0.797
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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