STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO31245.1Hypothetical protein; Identified by Glimmer3; putative. (357 aa)    
Predicted Functional Partners:
EFO31244.1
Sulfate transporter 4.1, ic; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
       0.773
EFO31243.1
Pyridine nucleotide-disulfide family oxidoreductase; Identified by match to protein family HMM PF04273; match to protein family HMM TIGR01244.
       0.522
EFO31242.1
Glyoxylase B2; Identified by match to protein family HMM PF00753.
       0.464
EFO31240.1
Identified by match to protein family HMM PF04143.
       0.445
EFO31241.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04143.
       0.445
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.