STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO31278.1Hemolysin-type calcium-binding region; Identified by match to protein family HMM PF00353. (6021 aa)    
Predicted Functional Partners:
EFO34067.1
Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594.
 
0.996
EFO28538.1
RTX-III toxin determinant A from serotype 2.
 
0.712
EFO32061.1
Iron-regulated protein FrpC; Identified by match to protein family HMM PF00353.
 
0.708
EFO28652.1
Putative toxin secretion transmembrane protein; Identified by match to protein family HMM PF00358; match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.697
EFO28696.1
HlyD family type I secretion membrane fusion protein; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.686
EFO28694.1
Outer membrane adhesin like protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF05345.
 
0.669
EFO33695.1
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
    0.663
EFO31282.1
HlyD family type I secretion membrane fusion protein.
 
  
 0.655
EFO33694.1
Alkaline protease secretion ATP-binding protein AprD; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.
 
   
 0.646
EFO31283.1
HlyD family secretion protein.
 
  
 0.638
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.