EFO31019.1 protein (Roseibium sp. TrichSKD4)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO31019.1	EFO31433.1	TRICHSKD4_3542	TRICHSKD4_3123	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.735
EFO31019.1	EFO32264.1	TRICHSKD4_3542	TRICHSKD4_2063	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	0.726
EFO31019.1	EFO32331.1	TRICHSKD4_3542	TRICHSKD4_2130	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Electron transfer flavoprotein subunit beta; Identified by match to protein family HMM PF01012.	0.726
EFO31019.1	EFO32332.1	TRICHSKD4_3542	TRICHSKD4_2131	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Electron transfer flavoprotein subunit alpha; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012.	0.735
EFO31019.1	EFO33727.1	TRICHSKD4_3542	TRICHSKD4_0837	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.736
EFO31019.1	EFO34417.1	TRICHSKD4_3542	TRICHSKD4_0201	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	0.726
EFO31019.1	EFO34564.1	TRICHSKD4_3542	TRICHSKD4_0349	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	L-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01070.	0.848
EFO31019.1	glcE	TRICHSKD4_3542	TRICHSKD4_0343	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Glycolate oxidase, subunit GlcE; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.750
EFO31019.1	glcF	TRICHSKD4_3542	TRICHSKD4_0342	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Glycolate oxidase, iron-sulfur subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.915
EFO31019.1	mdh	TRICHSKD4_3542	TRICHSKD4_1431	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.	0.690
EFO31433.1	EFO31019.1	TRICHSKD4_3123	TRICHSKD4_3542	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.735
EFO31433.1	EFO32264.1	TRICHSKD4_3123	TRICHSKD4_2063	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	0.554
EFO31433.1	EFO33727.1	TRICHSKD4_3123	TRICHSKD4_0837	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.876
EFO31433.1	EFO34417.1	TRICHSKD4_3123	TRICHSKD4_0201	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	0.554
EFO31433.1	glcE	TRICHSKD4_3123	TRICHSKD4_0343	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Glycolate oxidase, subunit GlcE; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.735
EFO31433.1	glcF	TRICHSKD4_3123	TRICHSKD4_0342	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Glycolate oxidase, iron-sulfur subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.883
EFO31433.1	mdh	TRICHSKD4_3123	TRICHSKD4_1431	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.	0.907
EFO32264.1	EFO31019.1	TRICHSKD4_2063	TRICHSKD4_3542	NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.726
EFO32264.1	EFO31433.1	TRICHSKD4_2063	TRICHSKD4_3123	NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.554
EFO32264.1	EFO32331.1	TRICHSKD4_2063	TRICHSKD4_2130	NADP-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.	Electron transfer flavoprotein subunit beta; Identified by match to protein family HMM PF01012.	0.560