EFO31020.1 protein (Roseibium sp. TrichSKD4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO29395.1	EFO30217.1	TRICHSKD4_5222	TRICHSKD4_3800	Conserved hypothetical protein; Identified by match to protein family HMM PF05853.	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	0.559
EFO29395.1	EFO31020.1	TRICHSKD4_5222	TRICHSKD4_3543	Conserved hypothetical protein; Identified by match to protein family HMM PF05853.	Thioesterase superfamily protein.	0.762
EFO30217.1	EFO29395.1	TRICHSKD4_3800	TRICHSKD4_5222	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	Conserved hypothetical protein; Identified by match to protein family HMM PF05853.	0.559
EFO30217.1	EFO31020.1	TRICHSKD4_3800	TRICHSKD4_3543	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	Thioesterase superfamily protein.	0.823
EFO30217.1	EFO31223.1	TRICHSKD4_3800	TRICHSKD4_3453	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	noyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Ehhadh; Belongs to the enoyl-CoA hydratase/isomerase family.	0.679
EFO30217.1	EFO34294.1	TRICHSKD4_3800	TRICHSKD4_0072	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.828
EFO31019.1	EFO31020.1	TRICHSKD4_3542	TRICHSKD4_3543	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Thioesterase superfamily protein.	0.539
EFO31020.1	EFO29395.1	TRICHSKD4_3543	TRICHSKD4_5222	Thioesterase superfamily protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF05853.	0.762
EFO31020.1	EFO30217.1	TRICHSKD4_3543	TRICHSKD4_3800	Thioesterase superfamily protein.	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	0.823
EFO31020.1	EFO31019.1	TRICHSKD4_3543	TRICHSKD4_3542	Thioesterase superfamily protein.	D-lactate dehydrogenase (cytochrome); Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.539
EFO31020.1	EFO31021.1	TRICHSKD4_3543	TRICHSKD4_3544	Thioesterase superfamily protein.	Chloride channel core; Identified by match to protein family HMM PF00654.	0.549
EFO31020.1	EFO31223.1	TRICHSKD4_3543	TRICHSKD4_3453	Thioesterase superfamily protein.	noyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Ehhadh; Belongs to the enoyl-CoA hydratase/isomerase family.	0.621
EFO31020.1	EFO32375.1	TRICHSKD4_3543	TRICHSKD4_2173	Thioesterase superfamily protein.	Glutamate dehydrogenase; Identified by match to protein family HMM PF05088.	0.481
EFO31020.1	EFO33026.1	TRICHSKD4_3543	TRICHSKD4_1649	Thioesterase superfamily protein.	Acyl carrier protein.	0.489
EFO31020.1	EFO34294.1	TRICHSKD4_3543	TRICHSKD4_0072	Thioesterase superfamily protein.	Fatty acid oxidation complex subunit alpha; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.621
EFO31020.1	acpP	TRICHSKD4_3543	TRICHSKD4_5454	Thioesterase superfamily protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.489
EFO31020.1	fabD	TRICHSKD4_3543	TRICHSKD4_5452	Thioesterase superfamily protein.	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.549
EFO31021.1	EFO31020.1	TRICHSKD4_3544	TRICHSKD4_3543	Chloride channel core; Identified by match to protein family HMM PF00654.	Thioesterase superfamily protein.	0.549
EFO31223.1	EFO30217.1	TRICHSKD4_3453	TRICHSKD4_3800	noyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Ehhadh; Belongs to the enoyl-CoA hydratase/isomerase family.	Lambda-crystallin; Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.	0.679
EFO31223.1	EFO31020.1	TRICHSKD4_3453	TRICHSKD4_3543	noyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Ehhadh; Belongs to the enoyl-CoA hydratase/isomerase family.	Thioesterase superfamily protein.	0.621