Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFO31043.1 | EFO31048.1 | TRICHSKD4_3566 | TRICHSKD4_3571 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.998 |
| EFO31043.1 | EFO33725.1 | TRICHSKD4_3566 | TRICHSKD4_0835 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Septum formation initiator; Identified by match to protein family HMM PF04977. | 0.599 |
| EFO31043.1 | ddl | TRICHSKD4_3566 | TRICHSKD4_3562 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.990 |
| EFO31043.1 | ftsA | TRICHSKD4_3566 | TRICHSKD4_3560 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.982 |
| EFO31043.1 | ftsQ | TRICHSKD4_3566 | TRICHSKD4_3561 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Putative Cell division FtsQ-like protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.997 |
| EFO31043.1 | murC | TRICHSKD4_3566 | TRICHSKD4_3564 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.995 |
| EFO31043.1 | murD | TRICHSKD4_3566 | TRICHSKD4_3567 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.994 |
| EFO31043.1 | murE | TRICHSKD4_3566 | TRICHSKD4_3570 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.969 |
| EFO31043.1 | murF | TRICHSKD4_3566 | TRICHSKD4_3569 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.985 |
| EFO31043.1 | murG | TRICHSKD4_3566 | TRICHSKD4_3565 | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.996 |
| EFO31048.1 | EFO31043.1 | TRICHSKD4_3571 | TRICHSKD4_3566 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Cell division protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.998 |
| EFO31048.1 | EFO33725.1 | TRICHSKD4_3571 | TRICHSKD4_0835 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Septum formation initiator; Identified by match to protein family HMM PF04977. | 0.543 |
| EFO31048.1 | ddl | TRICHSKD4_3571 | TRICHSKD4_3562 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.922 |
| EFO31048.1 | ftsA | TRICHSKD4_3571 | TRICHSKD4_3560 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.948 |
| EFO31048.1 | ftsQ | TRICHSKD4_3571 | TRICHSKD4_3561 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Putative Cell division FtsQ-like protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.996 |
| EFO31048.1 | murC | TRICHSKD4_3571 | TRICHSKD4_3564 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.948 |
| EFO31048.1 | murD | TRICHSKD4_3571 | TRICHSKD4_3567 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.963 |
| EFO31048.1 | murE | TRICHSKD4_3571 | TRICHSKD4_3570 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.989 |
| EFO31048.1 | murF | TRICHSKD4_3571 | TRICHSKD4_3569 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.953 |
| EFO31048.1 | murG | TRICHSKD4_3571 | TRICHSKD4_3565 | Penicillin-binding protein, transpeptidase; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.916 |
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