STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30164.1Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (400 aa)    
Predicted Functional Partners:
EFO30165.1
Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
EFO30518.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.997
EFO30166.1
Twin-arginine translocation pathway signal; Identified by match to protein family HMM TIGR01409.
 
 
 0.995
EFO28548.1
High-affinity branched-chain amino acid transport ATP-binding protein BraF; Identified by match to protein family HMM PF00005.
 
 0.989
EFO30163.1
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.988
livG
Branched-chain amino acid transport system; Identified by match to protein family HMM PF00005.
 
 0.981
EFO30517.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.977
EFO28547.1
High-affinity branched-chain amino acid transport ATP-binding protein LivF; Identified by match to protein family HMM PF00005.
 
 0.973
urtD
Urea ABC transporter, ATP-binding protein UrtD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03411.
 
 0.964
EFO28546.1
High-affinity branched-chain amino acid transport system permease protein LivH; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.964
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.