STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30313.1Type VI secretion system FHA domain protein; Identified by match to protein family HMM TIGR03354. (264 aa)    
Predicted Functional Partners:
EFO30314.1
Type VI secretion lipoprotein, family; Identified by match to protein family HMM TIGR03352.
 
  
 0.945
EFO30315.1
Type VI secretion protein, family; Identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353.
 
  
 0.932
EFO30316.1
LanF; Identified by match to protein family HMM TIGR03349.
 
  
 0.929
EFO30311.1
FHA domain-containing protein.
 
      0.864
clpV
Type VI secretion ATPase, ClpV1 family; Identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; Belongs to the ClpA/ClpB family.
 
 
 0.859
EFO30306.1
Type VI secretion protein, family; Identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358.
 
  
 0.847
icmF
Type VI secretion protein IcmF; Identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348.
 
  
 0.834
EFO30304.1
Type VI secretion-associated protein, family; Identified by match to protein family HMM TIGR03362.
 
  
 0.828
vasA
Type VI secretion protein, family; Identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359; overlaps another CDS with the same product name.
 
  
 0.825
EFO30310.1
Type VI secretion protein, family; Identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347; overlaps another CDS with the same product name.
 
  
 0.820
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.