STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30354.1Ubiquinol-cytochrome C chaperone; Identified by match to protein family HMM PF03981. (214 aa)    
Predicted Functional Partners:
EFO32657.1
Abhydrolase domain-containing protein 10; Identified by match to protein family HMM PF00561.
  
     0.728
EFO32714.1
YbaK/prolyl-tRNA synthetase associated region; Identified by match to protein family HMM PF04073.
  
     0.690
EFO30353.1
Putative cytoplasmic protein.
 
     0.662
EFO30093.1
Pole-organizing protein PopZ.
  
     0.660
EFO30355.1
SmpA/OmlA; Identified by match to protein family HMM PF04355.
       0.650
EFO33448.1
Identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
     0.533
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
       0.478
EFO29604.1
Putative TPR repeat-containing protein.
  
     0.471
fabH
3-oxoacyl-(acyl-carrier-protein) synthase 3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.468
EFO32213.1
Import inner membrane translocase subunit Tim44; Identified by match to protein family HMM PF04280.
  
     0.453
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.