STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30419.1Formate dehydrogenase, gamma subunit; Identified by match to protein family HMM TIGR01583. (385 aa)    
Predicted Functional Partners:
EFO30202.1
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
 0.998
EFO32967.1
Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.993
EFO30418.1
WD-containing repeat protein; Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
 
   
 0.932
EFO32966.1
NAD-reducing hydrogenase HoxS subunit alpha; Identified by match to protein family HMM PF01512.
 
 
 0.914
EFO30410.1
4Fe-4S ferredoxin, iron-sulfur binding; Identified by match to protein family HMM PF00037.
 
  
 0.896
nasA
Nitrate reductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.875
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
     
 0.865
EFO30424.1
Cytoplasmic chaperone TorD; Identified by match to protein family HMM PF06192.
 
  
 0.865
EFO30414.1
Conserved hypothetical protein.
 
     0.862
EFO30415.1
Conserved hypothetical protein.
 
     0.860
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.