STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30424.1Cytoplasmic chaperone TorD; Identified by match to protein family HMM PF06192. (207 aa)    
Predicted Functional Partners:
EFO30410.1
4Fe-4S ferredoxin, iron-sulfur binding; Identified by match to protein family HMM PF00037.
 
  
 0.906
EFO30419.1
Formate dehydrogenase, gamma subunit; Identified by match to protein family HMM TIGR01583.
 
  
 0.865
EFO30409.1
Putative molybdopterin-guanine dinucleotide biosynthesis protein A.
 
    0.861
EFO30408.1
Proline rich protein.
 
     0.858
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.823
EFO30203.1
Oxidoreductase, molybdopterin-binding; Identified by match to protein family HMM PF00384; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.815
EFO30414.1
Conserved hypothetical protein.
 
     0.800
EFO30415.1
Conserved hypothetical protein.
 
     0.787
EFO29644.1
Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.786
EFO29721.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
    0.784
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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