STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30493.1LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
EFO29305.1
Glycine cleavage system transcriptional activator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.700
EFO34568.1
Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.690
EFO31983.1
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
     0.685
EFO28864.1
LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.677
EFO28865.1
LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.673
EFO30024.1
LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.671
EFO33184.1
HTH-type transcriptional activator AmpR; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.665
EFO30712.1
HTH-type transcriptional regulator TrpI; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.662
EFO29383.1
Putative LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.661
EFO32159.1
Putative transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.655
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.