EFO30509.1 protein (Roseibium sp. TrichSKD4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFO30509.1

Acetyltransferase; Identified by match to protein family HMM PF00583. (161 aa)

Predicted Functional Partners:

argG

0.638

EFO30508.1

0.543

argB

0.490

argH

0.466

argJ

0.458

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO30508.1	EFO30509.1	TRICHSKD4_4100	TRICHSKD4_4101	Transporter for efflux.	Acetyltransferase; Identified by match to protein family HMM PF00583.	0.543
EFO30509.1	EFO30508.1	TRICHSKD4_4101	TRICHSKD4_4100	Acetyltransferase; Identified by match to protein family HMM PF00583.	Transporter for efflux.	0.543
EFO30509.1	argB	TRICHSKD4_4101	TRICHSKD4_1811	Acetyltransferase; Identified by match to protein family HMM PF00583.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.490
EFO30509.1	argG	TRICHSKD4_4101	TRICHSKD4_1171	Acetyltransferase; Identified by match to protein family HMM PF00583.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.638
EFO30509.1	argH	TRICHSKD4_4101	TRICHSKD4_2142	Acetyltransferase; Identified by match to protein family HMM PF00583.	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	0.466
EFO30509.1	argJ	TRICHSKD4_4101	TRICHSKD4_1274	Acetyltransferase; Identified by match to protein family HMM PF00583.	Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.458
argB	EFO30509.1	TRICHSKD4_1811	TRICHSKD4_4101	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Acetyltransferase; Identified by match to protein family HMM PF00583.	0.490
argB	argG	TRICHSKD4_1811	TRICHSKD4_1171	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.976
argB	argH	TRICHSKD4_1811	TRICHSKD4_2142	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	0.987
argB	argJ	TRICHSKD4_1811	TRICHSKD4_1274	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.999
argG	EFO30509.1	TRICHSKD4_1171	TRICHSKD4_4101	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Acetyltransferase; Identified by match to protein family HMM PF00583.	0.638
argG	argB	TRICHSKD4_1171	TRICHSKD4_1811	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.976
argG	argH	TRICHSKD4_1171	TRICHSKD4_2142	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	0.999
argG	argJ	TRICHSKD4_1171	TRICHSKD4_1274	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.967
argH	EFO30509.1	TRICHSKD4_2142	TRICHSKD4_4101	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Acetyltransferase; Identified by match to protein family HMM PF00583.	0.466
argH	argB	TRICHSKD4_2142	TRICHSKD4_1811	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.987
argH	argG	TRICHSKD4_2142	TRICHSKD4_1171	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.999
argH	argJ	TRICHSKD4_2142	TRICHSKD4_1274	Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.	Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.982
argJ	EFO30509.1	TRICHSKD4_1274	TRICHSKD4_4101	Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	Acetyltransferase; Identified by match to protein family HMM PF00583.	0.458
argJ	argB	TRICHSKD4_1274	TRICHSKD4_1811	Glutamate N-acetyltransferase/amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.999