EFO30533.1 protein (Roseibium sp. TrichSKD4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO30530.1	EFO30532.1	TRICHSKD4_4124	TRICHSKD4_4126	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	0.896
EFO30530.1	EFO30533.1	TRICHSKD4_4124	TRICHSKD4_4127	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Putative ABC transporter ATP-binding family protein; Identified by match to protein family HMM PF00005.	0.812
EFO30530.1	EFO30535.1	TRICHSKD4_4124	TRICHSKD4_4129	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Membrane-anchored protein.	0.600
EFO30530.1	EFO30537.1	TRICHSKD4_4124	TRICHSKD4_4131	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Glycosyl transferase group 1; Identified by match to protein family HMM PF00534.	0.566
EFO30530.1	EFO30538.1	TRICHSKD4_4124	TRICHSKD4_4132	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Glycosyltransferase 28 domain protein; Identified by match to protein family HMM PF04101.	0.661
EFO30530.1	EFO30539.1	TRICHSKD4_4124	TRICHSKD4_4133	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Glycosyltransferase family 28 protein.	0.639
EFO30530.1	EFO30549.1	TRICHSKD4_4124	TRICHSKD4_4143	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.	0.432
EFO30530.1	EFO30550.1	TRICHSKD4_4124	TRICHSKD4_4144	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by match to protein family HMM PF00496.	0.686
EFO30530.1	appC	TRICHSKD4_4124	TRICHSKD4_4142	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Oligopeptide ABC transporter, permease protein AppC; Identified by match to protein family HMM PF00528.	0.472
EFO30530.1	redB	TRICHSKD4_4124	TRICHSKD4_4130	Adenylate cyclase; Identified by match to protein family HMM PF00211.	Glucosyltransferase; Identified by match to protein family HMM PF00534.	0.663
EFO30532.1	EFO30530.1	TRICHSKD4_4126	TRICHSKD4_4124	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Adenylate cyclase; Identified by match to protein family HMM PF00211.	0.896
EFO30532.1	EFO30533.1	TRICHSKD4_4126	TRICHSKD4_4127	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Putative ABC transporter ATP-binding family protein; Identified by match to protein family HMM PF00005.	0.979
EFO30532.1	EFO30535.1	TRICHSKD4_4126	TRICHSKD4_4129	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Membrane-anchored protein.	0.693
EFO30532.1	EFO30537.1	TRICHSKD4_4126	TRICHSKD4_4131	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Glycosyl transferase group 1; Identified by match to protein family HMM PF00534.	0.613
EFO30532.1	EFO30538.1	TRICHSKD4_4126	TRICHSKD4_4132	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Glycosyltransferase 28 domain protein; Identified by match to protein family HMM PF04101.	0.666
EFO30532.1	EFO30539.1	TRICHSKD4_4126	TRICHSKD4_4133	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Glycosyltransferase family 28 protein.	0.547
EFO30532.1	EFO30550.1	TRICHSKD4_4126	TRICHSKD4_4144	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by match to protein family HMM PF00496.	0.530
EFO30532.1	appC	TRICHSKD4_4126	TRICHSKD4_4142	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Oligopeptide ABC transporter, permease protein AppC; Identified by match to protein family HMM PF00528.	0.433
EFO30532.1	redB	TRICHSKD4_4126	TRICHSKD4_4130	Cyclic nucleotide-binding protein; Identified by match to protein family HMM PF00027.	Glucosyltransferase; Identified by match to protein family HMM PF00534.	0.688
EFO30533.1	EFO30530.1	TRICHSKD4_4127	TRICHSKD4_4124	Putative ABC transporter ATP-binding family protein; Identified by match to protein family HMM PF00005.	Adenylate cyclase; Identified by match to protein family HMM PF00211.	0.812