STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30831.1Insertion sequence IS21 putative ATP-binding protein; Identified by match to protein family HMM PF01695. (263 aa)    
Predicted Functional Partners:
EFO30832.1
Transposase; Identified by match to protein family HMM PF00665.
    0.848
bacA
Protein SbmA; Identified by match to protein family HMM PF05992.
       0.557
EFO33331.1
Integrase catalytic region.
 
    0.527
EFO33799.1
Hypothetical protein; Identified by Glimmer3; putative.
  
 
 0.524
EFO30125.1
Putative replicative DNA helicase; Identified by match to protein family HMM PF00772; match to protein family HMM PF03796.
  
 
 0.524
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.524
EFO31270.1
Integrase catalytic region; Identified by match to protein family HMM PF00665.
 
    0.434
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
Server load: low (28%) [HD]