STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30924.1Phage-related protein. (123 aa)    
Predicted Functional Partners:
EFO30925.1
Phage tail tube protein FII; Identified by match to protein family HMM PF04985.
       0.524
EFO30926.1
Tail sheath protein.
       0.524
EFO30927.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.524
EFO30919.1
Putative bacteriophage late control D protein; Identified by match to protein family HMM PF05954.
       0.481
EFO30920.1
Phage Tail Protein X; Identified by match to protein family HMM PF05489.
       0.481
EFO30921.1
Phage P2 GpU superfamily; Identified by match to protein family HMM PF06995.
       0.481
EFO30922.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.481
EFO30923.1
Phage tail fiber protein; Identified by match to protein family HMM TIGR01760.
       0.481
EFO30928.1
Conserved hypothetical protein.
       0.429
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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