STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kptAPutative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (182 aa)    
Predicted Functional Partners:
EFO28947.1
YbaK/prolyl-tRNA synthetase associated region; Identified by match to protein family HMM PF04073.
       0.693
EFO33097.1
Release factor H-coupled RctB family protein; Identified by match to protein family HMM PF01139; match to protein family HMM TIGR03073.
 
   
 0.657
EFO33278.1
Conserved hypothetical protein.
 
   
 0.621
EFO32907.1
Conserved hypothetical protein.
 
    0.578
EFO32906.1
ATPase; Identified by match to protein family HMM PF07728.
  
     0.576
EFO32908.1
VWA containing CoxE family protein; Identified by match to protein family HMM PF05762.
  
     0.543
EFO33281.1
Trove domain-containing protein; Identified by match to protein family HMM PF05731.
  
     0.480
EFO28948.1
Putative sporulation membrane protein.
       0.448
EFO32527.1
Von Willebrand factor type A domain-containing protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF08487.
  
     0.424
EFO32904.1
Putative zinc finger swim domain-containing protein.
  
     0.422
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.