STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dehIIHaloacid dehalogenase, type II; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493. (220 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.801
EFO30617.1
Alpha/beta hydrolase; Identified by match to protein family HMM PF00561.
 
 
 0.744
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.728
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.709
dehH
Haloacetate dehalogenase H-1; Identified by match to protein family HMM PF00561.
  
 
 0.701
EFO30594.1
Putative hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
  
 
 0.701
EFO30619.1
Alpha/beta hydrolase fold protein; Identified by match to protein family HMM PF00561.
  
 
 0.701
EFO29525.1
Bifunctional NMN adenylyltransferase/Nudix hydrolase; Identified by match to protein family HMM PF00293; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
    
 0.691
EFO31789.1
Putative cytoplasmic protein.
  
     0.533
EFO29465.1
Alpha/beta hydrolase fold protein; Identified by match to protein family HMM PF00561.
  
 
 0.468
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.