STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29063.1Cysteine desulfuration protein SufE; Identified by match to protein family HMM PF02657. (144 aa)    
Predicted Functional Partners:
EFO29741.1
Cysteine desulfurase; Identified by match to protein family HMM PF00266; overlaps another CDS with the same product name.
 0.987
EFO29742.1
Cysteine desulfurase; Identified by match to protein family HMM PF00266; overlaps another CDS with the same product name.
 0.986
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 0.957
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
 0.947
sufD
FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981.
 
 0.917
EFO29743.1
FeS assembly SUF system protein; Identified by match to protein family HMM PF01883; match to protein family HMM TIGR02945.
     0.834
EFO29551.1
class-V aminotransferase; Identified by match to protein family HMM PF00266.
 
 0.806
EFO33710.1
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
  
 0.782
EFO29448.1
Aminotransferase class V; Identified by match to protein family HMM PF00266.
 
 0.782
EFO29064.1
Conserved hypothetical protein.
       0.468
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.