STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29080.1Transposase; Identified by match to protein family HMM PF00665. (526 aa)    
Predicted Functional Partners:
EFO29081.1
Insertion sequence IS21 putative ATP-binding protein; Identified by match to protein family HMM PF01695.
    0.848
EFO33333.1
Helper protein.
  
    0.776
EFO29082.1
NlpC/P60 family phage cell wall peptidase.
       0.709
EFO29083.1
Gene transfer agent.
       0.709
EFO29079.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.572
EFO29084.1
Gene transfer agent.
       0.539
EFO29078.1
Putative transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.454
EFO29085.1
Gene transfer agent.
       0.421
EFO29086.1
IS66 Orf2 family protein.
       0.421
EFO28599.1
Transposase.
  
     0.402
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.