STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29452.1anti-ECFsigma factor, ChrR. (222 aa)    
Predicted Functional Partners:
EFO29453.1
Glutathione S-transferase 2; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
 
     0.771
EFO29451.1
TetR family transcriptional regulator; Identified by match to protein family HMM PF00440.
 
     0.755
EFO28505.1
Amine oxidase; Identified by match to protein family HMM PF01593.
 
     0.649
EFO33395.1
RNA polymerase sigma factor RpoE; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.573
EFO30321.1
ECF subfamily RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.536
EFO32183.1
ECF subfamily RNA polymerase sigma-24 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
   
 
 0.535
EFO30880.1
ECF subfamily RNA polymerase sigma-24 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.535
EFO29450.1
Toxin-antitoxin system, toxin component, PIN family; Identified by match to protein family HMM PF01966.
       0.481
catB_1
Phosphonate metabolim protein, transferase hexapeptide repeat family; Identified by match to protein family HMM TIGR03308.
       0.460
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.