STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29542.1Putative Fe-S oxidoreductase; Identified by match to protein family HMM PF04055. (578 aa)    
Predicted Functional Partners:
EFO30385.1
Heme NO binding domain-containing protein; Identified by match to protein family HMM PF07700.
  
 
 0.970
ppk_2
Polyphosphate kinase 2; Identified by match to protein family HMM PF03976; match to protein family HMM TIGR03707.
   
    0.808
pap
polyphosphate:AMP phosphotransferase; Identified by match to protein family HMM PF03976; match to protein family HMM TIGR03708.
   
    0.808
EFO30796.1
Polyphosphate kinase 2; Identified by match to protein family HMM PF03976; match to protein family HMM TIGR03707.
   
    0.808
hemN
Oxygen-independent coproporphyrinogen III oxidase; Identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.736
EFO29543.1
Putative N-acylneuraminate cytidylyltransferase; Identified by match to protein family HMM PF02348.
       0.652
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.651
EFO33987.1
Methyltransferase type 11; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.
 
 
 0.582
EFO29541.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.572
EFO33449.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01878.
   
    0.524
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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