rarD protein (Roseibium sp. TrichSKD4) - STRING interaction network

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Predicted Interactions

gene neighborhood

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co-expression

protein homology

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Score

rarD

Protein RarD; Identified by match to protein family HMM TIGR00688. (315 aa)

Predicted Functional Partners:

EFO29575.1

0.700

EFO29573.1

0.695

EFO29574.1

0.695

cysS

0.693

EFO29571.1

0.477

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO29571.1	EFO29573.1	TRICHSKD4_5400	TRICHSKD4_5402	Hypothetical protein; Identified by Glimmer3; putative.	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	0.534
EFO29571.1	EFO29574.1	TRICHSKD4_5400	TRICHSKD4_5403	Hypothetical protein; Identified by Glimmer3; putative.	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	0.534
EFO29571.1	EFO29575.1	TRICHSKD4_5400	TRICHSKD4_5404	Hypothetical protein; Identified by Glimmer3; putative.	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.534
EFO29571.1	cysS	TRICHSKD4_5400	TRICHSKD4_5401	Hypothetical protein; Identified by Glimmer3; putative.	cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.545
EFO29571.1	rarD	TRICHSKD4_5400	TRICHSKD4_5405	Hypothetical protein; Identified by Glimmer3; putative.	Protein RarD; Identified by match to protein family HMM TIGR00688.	0.477
EFO29573.1	EFO29571.1	TRICHSKD4_5402	TRICHSKD4_5400	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	Hypothetical protein; Identified by Glimmer3; putative.	0.534
EFO29573.1	EFO29574.1	TRICHSKD4_5402	TRICHSKD4_5403	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	0.802
EFO29573.1	EFO29575.1	TRICHSKD4_5402	TRICHSKD4_5404	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.782
EFO29573.1	cysS	TRICHSKD4_5402	TRICHSKD4_5401	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.773
EFO29573.1	rarD	TRICHSKD4_5402	TRICHSKD4_5405	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	Protein RarD; Identified by match to protein family HMM TIGR00688.	0.695
EFO29574.1	EFO29571.1	TRICHSKD4_5403	TRICHSKD4_5400	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	Hypothetical protein; Identified by Glimmer3; putative.	0.534
EFO29574.1	EFO29573.1	TRICHSKD4_5403	TRICHSKD4_5402	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	0.802
EFO29574.1	EFO29575.1	TRICHSKD4_5403	TRICHSKD4_5404	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.785
EFO29574.1	cysS	TRICHSKD4_5403	TRICHSKD4_5401	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.775
EFO29574.1	rarD	TRICHSKD4_5403	TRICHSKD4_5405	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	Protein RarD; Identified by match to protein family HMM TIGR00688.	0.695
EFO29575.1	EFO29571.1	TRICHSKD4_5404	TRICHSKD4_5400	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	Hypothetical protein; Identified by Glimmer3; putative.	0.534
EFO29575.1	EFO29573.1	TRICHSKD4_5404	TRICHSKD4_5402	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	0.782
EFO29575.1	EFO29574.1	TRICHSKD4_5404	TRICHSKD4_5403	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	Glutathione-dependent formaldehyde-activating GFA; Identified by match to protein family HMM PF04828; overlaps another CDS with the same product name.	0.785
EFO29575.1	cysS	TRICHSKD4_5404	TRICHSKD4_5401	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.858
EFO29575.1	rarD	TRICHSKD4_5404	TRICHSKD4_5405	2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.	Protein RarD; Identified by match to protein family HMM TIGR00688.	0.700