STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29808.1MarR family transcriptional regulator; Identified by match to protein family HMM PF01047. (156 aa)    
Predicted Functional Partners:
EFO29807.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
     0.985
EFO29810.1
salicylyl-CoA 5-hydroxylase; Identified by match to protein family HMM PF00724; match to protein family HMM PF01494.
 
  
 0.965
EFO29805.1
benzoate--CoA ligase; Identified by match to protein family HMM PF00501.
 
     0.964
EFO29809.1
Granaticin polyketide synthase putative ketoacyl reductase 1; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
  
  0.960
EFO29806.1
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
 
  
  0.946
EFO29802.1
Endoribonuclease L-PSP; Identified by match to protein family HMM PF01042.
 
     0.906
kynA
Chain C, H55a Mutant Of Tryptophan 2,3-Dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
     0.881
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.780
EFO29811.1
Esterase/lipase/thioesterase.
 
     0.637
EFO30521.1
Substrate-binding protein.
 
     0.605
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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