STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29908.1AraC family transcriptional regulator; Identified by match to protein family HMM PF00165. (329 aa)    
Predicted Functional Partners:
EFO29907.1
Transcriptional regulator; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
 
    0.693
EFO29909.1
Sarcosine oxidase gamma subunit family protein.
 
    0.687
EFO30691.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
 
 0.619
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.557
EFO29910.1
Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
     0.507
EFO29911.1
Sarcosine oxidase, delta subunit; Identified by match to protein family HMM PF04267.
 
     0.487
EFO31745.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF06445.
 
 
 0.436
lexA
Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.402
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.