STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO29910.1Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR01372; Belongs to the GcvT family. (983 aa)    
Predicted Functional Partners:
EFO29723.1
Sarcosine oxidase subunit delta; Identified by match to protein family HMM PF04267; match to protein family HMM TIGR01374.
 0.999
EFO29909.1
Sarcosine oxidase gamma subunit family protein.
 
 0.999
EFO29911.1
Sarcosine oxidase, delta subunit; Identified by match to protein family HMM PF04267.
 
 0.999
EFO30266.1
Sarcosine oxidase subunit delta; Identified by match to protein family HMM PF04267.
 
 0.998
EFO29722.1
Sarcosine oxidase gamma subunit; Identified by match to protein family HMM PF04268.
 
 0.998
EFO29912.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.998
EFO30265.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.993
EFO29724.1
Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373.
 
 0.993
EFO30268.1
Sarcosine oxidase gamma subunit; Identified by match to protein family HMM PF04268.
 
 0.991
EFO31612.1
Dimethylglycine dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
 
0.988
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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