STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30015.1Hemimethylated DNA binding protein; Identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097. (119 aa)    
Predicted Functional Partners:
EFO32647.1
Conserved hypothetical protein.
 
     0.655
EFO30016.1
HpcH/HpaI aldolase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
       0.585
EFO28855.1
Conserved hypothetical protein; Identified by match to protein family HMM PF06793; Belongs to the UPF0262 family.
  
     0.427
EFO30017.1
Lipid A biosynthesis lauroyl acyltransferase; Identified by match to protein family HMM PF03279.
       0.424
EFO33168.1
Identified by match to protein family HMM PF00877.
  
     0.421
galU
UTP-glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099.
      
 0.418
EFO34328.1
GcrA cell cycle regulator; Identified by match to protein family HMM PF07750.
  
     0.411
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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