STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30038.1Hex regulon repressor; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418. (288 aa)    
Predicted Functional Partners:
glk
Glucokinase; Identified by match to protein family HMM PF02685; Belongs to the bacterial glucokinase family.
   
 0.939
EFO30039.1
YigF family translation initiation factor; Identified by match to protein family HMM PF01042.
 
     0.849
EFO30037.1
3-oxoacyl-[acyl-carrier-protein] reductase, ic; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
 
  
  0.833
EFO30036.1
Beta-hexosaminidase; Identified by match to protein family HMM PF00728.
 
     0.793
EFO30035.1
MlrC domain-containing protein; Identified by match to protein family HMM PF07171; match to protein family HMM PF07364.
 
     0.762
EFO30042.1
Peptidase; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.721
EFO30860.1
Khg/kdpg aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
  
 0.658
EFO30040.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.598
EFO30043.1
Alanine racemase domain protein; Identified by match to protein family HMM PF01168.
 
     0.582
EFO30051.1
N-acetylmuramic acid 6-phosphate etherase.
 
  
 0.579
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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