STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30060.1Polysaccharide deacetylase; Identified by match to protein family HMM PF01522; match to protein family HMM PF09349; match to protein family HMM TIGR03164. (488 aa)    
Predicted Functional Partners:
uraH
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.998
EFO29840.1
Allantoate amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879; overlaps another CDS with the same product name.
  
 0.962
allA
Ureidoglycolate hydrolase; Identified by match to protein family HMM PF04115.
 
 
  0.960
EFO30058.1
Class I monoheme cytochrome c; Identified by match to protein family HMM PF06181.
 
    0.937
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965.
 
     0.815
EFO34194.1
Conserved hypothetical protein.
    
  0.803
xdhA
Xanthine dehydrogenase, small subunit; Identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963.
 
     0.798
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
   
 0.792
pyrC
Dihydroorotase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857.
    
 0.754
hydA
Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.
    
 0.754
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.