STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO30092.1Type I secretion outer membrane protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844. (461 aa)    
Predicted Functional Partners:
EFO33707.1
RND family efflux transporter MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.965
EFO29589.1
RND family efflux transporter MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.963
EFO34322.1
Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.922
EFO31786.1
RND family efflux transporter MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.
  
 0.922
EFO33708.1
Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.903
EFO34321.1
Acriflavin resistance protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.880
EFO31787.1
AcrB/AcrD/AcrF family transporter; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.880
EFO29588.1
Acriflavin resistance protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.880
EFO33695.1
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
 0.878
EFO31282.1
HlyD family type I secretion membrane fusion protein.
 
 0.861
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.