STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO28553.1GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. (205 aa)    
Predicted Functional Partners:
EFO28911.1
Putative GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.772
EFO28498.1
GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.767
EFO28554.1
Invasion protein IbeA.
       0.669
EFO32084.1
Transcriptional regulator NanR; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.664
EFO28555.1
Aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.604
EFO32425.1
Regulatory protein GntR HTH; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.471
ilvN
Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119.
   
    0.410
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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