STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFS48213.1PFAM: Binding-protein-dependent transport system inner membrane component; overlaps another CDS with the same product name. (313 aa)    
Predicted Functional Partners:
AFS48212.1
PFAM: Binding-protein-dependent transport system inner membrane component; overlaps another CDS with the same product name.
 0.999
potA
Spermidine/putrescine ABC transporter, ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.998
AFS48215.1
Extracellular solute-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.991
AFS49320.1
PFAM: Binding-protein-dependent transport system inner membrane component; overlaps another CDS with the same product name.
0.903
AFS49318.1
ABC transporter,TOBE domain-containing protein; PFAM: ABC transporter; TOBE domain.
 
 0.876
AFS49275.1
ABC transporter,TOBE domain-containing protein; PFAM: ABC transporter; TOBE domain.
 
 0.758
AFS48374.1
PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.639
AFS49317.1
PFAM: Bacterial extracellular solute-binding protein.
  
 
 0.578
AFS48217.1
PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
     
 0.494
AFS48216.1
PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase.
       0.478
Your Current Organism:
alpha proteobacterium HIMB59
NCBI taxonomy Id: 744985
Other names: a. proteobacterium HIMB59
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