STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFS48258.1Hypothetical protein. (174 aa)    
Predicted Functional Partners:
AFS48260.1
Hypothetical protein.
 
  
 0.904
AFS48600.1
Na+/melibiose symporter-like transporter.
 
 
 0.854
AFS48261.1
PFAM: Flavin containing amine oxidoreductase.
 
   
 0.849
AFS49083.1
PFAM: short chain dehydrogenase.
 
  
 0.823
AFS48778.1
Chalcone-flavanone isomerase.
 
     0.762
AFS49636.1
Hypothetical protein.
  
 
 0.761
AFS48531.1
TIGRFAM: anti-sigma factor, putative, ChrR family.
 
   
 0.700
AFS49364.1
PFAM: Outer membrane efflux protein.
  
 
 0.668
AFS48259.1
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.653
AFS48262.1
PFAM: FAD binding domain of DNA photolyase; DNA photolyase.
  
  
 0.544
Your Current Organism:
alpha proteobacterium HIMB59
NCBI taxonomy Id: 744985
Other names: a. proteobacterium HIMB59
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.