STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFS48917.1PFAM: DUF218 domain. (188 aa)    
Predicted Functional Partners:
AFS48916.1
PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
     0.825
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.773
AFS48919.1
Hypothetical protein.
       0.773
argH
PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
       0.773
AFS48921.1
Hypoxia-induced family protein; PFAM: Hypoxia induced protein conserved region.
       0.757
AFS48922.1
PFAM: Phospholipase/Carboxylesterase.
       0.547
AFS48503.1
PFAM: GcrA cell cycle regulator.
  
     0.456
AFS48923.1
PFAM: HNH endonuclease.
       0.448
thrB
PFAM: Phosphotransferase enzyme family; TIGRFAM: homoserine kinase, Neisseria type; Belongs to the pseudomonas-type ThrB family.
  
    0.442
AFS48321.1
Putative protein tyrosine phosphatase.
  
     0.438
Your Current Organism:
alpha proteobacterium HIMB59
NCBI taxonomy Id: 744985
Other names: a. proteobacterium HIMB59
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