STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ57472.1Fe-S oxidoreductase; PFAM: Domain of unknown function (DUF3362); Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ. (707 aa)    
Predicted Functional Partners:
EHQ57471.1
PFAM: Ion transport protein.
  
    0.783
EHQ57470.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase.
       0.773
EHQ56861.1
PFAM: 2-vinyl bacteriochlorophyllide hydratase (BCHF); TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase.
   
 
 0.629
EHQ57468.1
PFAM: Predicted permease.
       0.552
EHQ57469.1
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; PFAM: ABC transporter.
       0.539
EHQ57473.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.536
acsF
Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
     
 0.505
EHQ56859.1
Chlorophyll synthase; PFAM: UbiA prenyltransferase family; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase.
   
 
 0.419
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
   
 
 0.419
Your Current Organism:
gamma proteobacterium HIMB55
NCBI taxonomy Id: 745014
Other names: g. proteobacterium HIMB55
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