STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ58638.1Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain. (377 aa)    
Predicted Functional Partners:
EHQ57406.1
Sarcosine oxidase, alpha subunit family, heterotetrameric form; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form; Belongs to the GcvT family.
 
 
 0.661
EHQ57407.1
PFAM: Sarcosine oxidase, delta subunit family; TIGRFAM: sarcosine oxidase, delta subunit family, heterotetrameric form.
 
    0.549
EHQ58637.1
PFAM: Bacterial regulatory proteins, tetR family.
    
  0.513
EHQ57405.1
PFAM: Sarcosine oxidase, gamma subunit family; TIGRFAM: sarcosine oxidase, gamma subunit family, heterotetrameric form.
  
    0.501
Your Current Organism:
gamma proteobacterium HIMB55
NCBI taxonomy Id: 745014
Other names: g. proteobacterium HIMB55
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