STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGH49443.1Sex pilus assembly protein TraH. (474 aa)    
Predicted Functional Partners:
AGH49438.1
Mating pair stabilization protein TraN.
 
   
 0.924
AGH49441.1
Thioredoxin-like protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.914
AGH49436.1
Conjugal DNA transfer protein.
 
   
 0.898
AGH49437.1
Hypothetical protein.
 
     0.890
AGH49432.1
COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.853
AGH49435.1
Hypothetical protein.
 
   
 0.844
AGH49444.1
DNA transfer and F pilus assembly protein TraG.
 
   
 0.836
AGH49420.1
Conjugal transfer protein TraB.
 
     0.814
AGH49422.1
Type IV secretory pathway VirB4 component.
 
   
 0.750
AGH49440.1
Type IV secretory protease.
       0.666
Your Current Organism:
Sphingomonas sp. MM1
NCBI taxonomy Id: 745310
Other names: S. sp. MM-1, Sphingomonas sp. MM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.