STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGH50360.1ABC transporter-like protein; COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component. (230 aa)    
Predicted Functional Partners:
AGH50361.1
Hypothetical protein; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
 
     0.958
AGH48078.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
     0.901
AGH50359.1
GDSL family lipase; COG2755 Lysophospholipase L1 and related esterases.
 
     0.896
AGH50350.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
     0.754
ccmA
Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
  
     0.696
AGH50454.1
COG0464 ATPases of the AAA+ class.
  
     0.583
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.579
cysS
COG0215 Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.512
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
  
     0.497
AGH50650.1
COG0464 ATPases of the AAA+ class.
  
     0.497
Your Current Organism:
Sphingomonas sp. MM1
NCBI taxonomy Id: 745310
Other names: S. sp. MM-1, Sphingomonas sp. MM-1
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