STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGH50514.1IstB ATP binding domain-containing protein; COG1484 DNA replication protein. (242 aa)    
Predicted Functional Partners:
AGH50513.1
COG4584 Transposase and inactivated derivatives.
    0.921
AGH48337.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.745
AGH47844.1
COG4584 Transposase and inactivated derivatives.
    0.666
AGH50152.1
COG4584 Transposase and inactivated derivatives.
    0.666
AGH50162.1
COG4584 Transposase and inactivated derivatives.
    0.666
AGH50314.1
COG4584 Transposase and inactivated derivatives.
    0.666
AGH50709.1
COG4584 Transposase and inactivated derivatives.
    0.666
AGH50201.1
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
    0.650
AGH50212.1
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
    0.650
AGH51421.1
Integrase catalytic subunit; COG4584 Transposase and inactivated derivatives.
    0.650
Your Current Organism:
Sphingomonas sp. MM1
NCBI taxonomy Id: 745310
Other names: S. sp. MM-1, Sphingomonas sp. MM-1
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