STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGH50888.1COG1309 Transcriptional regulator. (266 aa)    
Predicted Functional Partners:
AGH50887.1
COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.835
AGH50885.1
COG1960 Acyl-CoA dehydrogenases.
 
     0.808
AGH50884.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.773
AGH50886.1
COG1960 Acyl-CoA dehydrogenases.
       0.773
AGH50889.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
       0.449
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.404
Your Current Organism:
Sphingomonas sp. MM1
NCBI taxonomy Id: 745310
Other names: S. sp. MM-1, Sphingomonas sp. MM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.