STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGH50894.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (770 aa)    
Predicted Functional Partners:
AGH50032.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.758
AGH51339.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.709
AGH50895.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.662
AGH50896.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.662
AGH50897.1
COG1960 Acyl-CoA dehydrogenases.
       0.662
AGH50898.1
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
       0.662
AGH50507.1
TonB-dependent receptor-like protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
   
 0.658
AGH50899.1
COG1960 Acyl-CoA dehydrogenases.
       0.649
AGH50900.1
Dehydratase; COG2030 Acyl dehydratase.
       0.649
AGH50901.1
Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase.
       0.636
Your Current Organism:
Sphingomonas sp. MM1
NCBI taxonomy Id: 745310
Other names: S. sp. MM-1, Sphingomonas sp. MM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.