STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGH51475.1Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components. (665 aa)    
Predicted Functional Partners:
AGH51474.1
Hypothetical protein.
 
     0.940
AGH51408.1
COG3505 Type IV secretory pathway, VirD4 components.
  
  
 
0.928
AGH50439.1
Conjugal transfer coupling protein TraG; COG3505 Type IV secretory pathway, VirD4 components.
  
  
 
0.901
AGH51472.1
Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
   
 0.898
AGH51470.1
Conjugal transfer ATPase TrbE; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.892
AGH51464.1
Conjugation TrbI family protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.889
AGH51471.1
COG5268 Type IV secretory pathway, TrbD component.
 
     0.883
AGH51469.1
COG5314 Conjugal transfer/entry exclusion protein.
 
   
 0.876
AGH51465.1
Conjugal transfer protein TrbG; COG3504 Type IV secretory pathway, VirB9 components.
 
   
 0.875
AGH51467.1
Conjugal transfer protein TrbL; COG3846 Type IV secretory pathway, TrbL components.
 
   
 0.863
Your Current Organism:
Sphingomonas sp. MM1
NCBI taxonomy Id: 745310
Other names: S. sp. MM-1, Sphingomonas sp. MM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.