STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C11orf88Chromosome unknown open reading frame, human C11orf88. (169 aa)    
Predicted Functional Partners:
GTF2B
Transcription initiation factor TFIIB.
   
 0.859
TAF2
Transcription initiation factor TFIID subunit 2.
    
 0.847
TAF9B
Transcription initiation factor TFIID subunit 9B.
    
 0.847
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.847
TAF12
Transcription initiation factor TFIID subunit 12.
    
 0.847
TAF1
Transcription initiation factor TFIID subunit 1.
    
 0.847
TAF11
Transcription initiation factor TFIID subunit 11.
   
 0.846
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.845
TAF13
Transcription initiation factor TFIID subunit 13.
   
 0.844
GTF2A2
Transcription initiation factor TFIIA small subunit.
   
 0.843
Your Current Organism:
Panthera tigris
NCBI taxonomy Id: 74533
Other names: Amur tiger, P. tigris altaica, Panthera tigris altaica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.